rs244956913 SNP Detail

Summary

• ID
  rs244956913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184465935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTGGAG GGAGGCACTG
  TCCGAGCCTC CACAGCCAGC GCCTTCCATT CTTGCTAGGG TCTTTAGAAC TCAGCCTAGG
  TGCACTGGGA ATTTTCTGTC GCATCAACAT CTCTATTTTA AGAATTCGTT CTCTTTTAAA
  TTATAGTCAG AGTGGATTTC CCCGCCCCTC TCCCAAACAG ACCACAGGCC ACCTAGATGA
  R
  CGGTTGTTGC ACATTTCAGG AAGAAAATAA AATAATGACA ATAACGAAAC CACCAAATCT
  TTTGTTTTCG ATTGTCCAAG TAAGTGTCTC CGGAATGATA TTCCAAGGCA GGCTTATTTC
  CCCTCAGCAA TAAGATACCA AAAACTGGAA GCCGTGAGGG AACTGCCAGG CTACTATCAG
  CTCAGGATTG GCGTGAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168844	CHEV_1_186557617	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244956913					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184465935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	499 bp distal
Cpgi1159	CpG island 1159	837 bp proximal
Gm34342	predicted gene, 34342	within coordinates
Hlx	H2.0-like homeobox	1245 bp upstream
Rr396693	regulatory region 396693	888 bp downstream
Rr425265	regulatory region 425265	1971 bp distal
Rr425266	regulatory region 425266	954 bp distal
Rr425267	regulatory region 425267	within coordinates
Rr425268	regulatory region 425268	430 bp proximal
Tssr10589	transcription start site region 10589	934 bp downstream
Tssr10590	transcription start site region 10590	1668 bp upstream
Tssr15637	transcription start site region 15637	1856 bp upstream
Tssr15638	transcription start site region 15638	1789 bp upstream
Tssr15639	transcription start site region 15639	1620 bp upstream
Tssr15640	transcription start site region 15640	1589 bp upstream
Tssr15641	transcription start site region 15641	1551 bp upstream
Tssr15642	transcription start site region 15642	1299 bp upstream
Tssr15643	transcription start site region 15643	1247 bp upstream
Tssr15644	transcription start site region 15644	1213 bp upstream
Tssr15645	transcription start site region 15645	1193 bp upstream
Tssr15646	transcription start site region 15646	1111 bp upstream
Tssr15647	transcription start site region 15647	1044 bp upstream
Tssr15648	transcription start site region 15648	1282 bp downstream