rs244969470 SNP Detail

Summary

• ID
  rs244969470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGATAA GTAGTTTGTG
  AAGGATTTTC TCTCCCACCT CTGATGCAGC ATCTGCTTAC AGATGATACA AACTTCTCTG
  GGGGGGGAGG GTGAGAACGA GGTGGGGAAC TGCTACCCCC CCCCCCCCAA GGAAGGAATC
  CCAGTGCAGT TTCCTTGTGT TAGTTAAAAC CTTGGCTTCT GTAATGGAAT CCTTACACTG
  Y
  CTACACTGAG TCACATAAAA ATCTCAGCTG TGATGTTACC TGTCCTGAGA TCCACCATAG
  CCCACCTTCC CAGTGTGGGT CAGACCGGCT TCTTGCCACA GACCTGGAAA TCATTCATCA
  CCTTTAGCAC TGAGGCGTCT TAGAAAATAT ATAATGTGAG CACAATTGTT TTGTGTGTTC
  TTTTGAGACA GGGTCTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484091	CHEV_10_114750437	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244969470					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1433 bp proximal
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr439191	regulatory region 439191	1289 bp distal
Rr439192	regulatory region 439192	107 bp distal
Tssr95806	transcription start site region 95806	1650 bp upstream
Tssr95807	transcription start site region 95807	1702 bp upstream
Tssr99318	transcription start site region 99318	1494 bp downstream
Tssr99319	transcription start site region 99319	1528 bp downstream