rs244978662 SNP Detail

Summary

• ID
  rs244978662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58664018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCTAGTG GATAACAAAT CTAAGTTTCA
  CCAACTATAA TCTCATTGCT GAGGGAGGAG GCAGAGGCTC TGGTTGACTG GGGCTTCTAG
  TTCTGGGTAG GGCTAATTAG ATTCAGAATG CCATTTGCAA ACTGCAGCTG GCTGTATTAG
  R
  CCAGGGCCAC AGGCTCAGGT AACCTGACAA GGAAGATATT GCTGTCCTGG GCCTGAGACA
  TCAGGGGATA AACAGTTTCC CATTCTGTCT TCCAACTTTC AGTCCTGACA TGGAAATTAT
  CTTGTTTTGC ATATTGGAAA GGTTCATTGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325872641	CHEV_19_58750076	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244978662					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58664018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	381 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	418 bp distal
Rr365894	regulatory region 365894	1383 bp proximal
Tssr157269	transcription start site region 157269	1835 bp downstream
Tssr157270	transcription start site region 157270	1761 bp downstream
Tssr157271	transcription start site region 157271	521 bp downstream
Tssr157272	transcription start site region 157272	505 bp downstream
Tssr157273	transcription start site region 157273	612 bp upstream
Tssr157274	transcription start site region 157274	644 bp upstream
Tssr157275	transcription start site region 157275	664 bp upstream
Tssr157276	transcription start site region 157276	687 bp upstream
Tssr157277	transcription start site region 157277	928 bp upstream
Tssr157278	transcription start site region 157278	1550 bp upstream
Tssr157279	transcription start site region 157279	1567 bp upstream
Tssr157280	transcription start site region 157280	1583 bp upstream
Tssr159961	transcription start site region 159961	416 bp upstream