rs244980330 SNP Detail

Summary

• ID
  rs244980330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46990916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAAGAA TCCAAGTCCA
  AGGCACTCGT GCTGGGGCAT GGAGGCAGGG GGATGTCTGT GTAATTAAGG TCAGCCACCT
  GGGTCTACAC AGTAAGTCCC AAATTAGCCA GAGCTACAAG AACCTGTCTC AAAAAAAAAA
  AACAAACAAA AAATAGAGAA AGAAAGGAAA GAACGTGGTG GTGGAGAGCC TATCAACCTC
  Y
  TTCATATCTT TTACTCTCCT TTGAAAGTAA GTCCAGATAA AACGAAAATG CACAAAGATA
  AGACTACAAT CCCAGTGGCA GACGGAGGAA GACTCCATCT TCCTAAGGAG AACTCGGAGG
  CAGGAGGTTA TACGTTATCT CTGGGTCTCC AGCATTTCCC ACCAATAGGC CATTTTCAAC
  ATCCCAGCCC CTGAGGTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398326243	MGP_WTSI_17_46816939	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244980330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326243	MGP_WTSI_17_46816939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46990916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	464 bp proximal
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	799 bp upstream
Rr527794	regulatory region 527794	641 bp distal
Rr527795	regulatory region 527795	within coordinates
Tssr5136	transcription start site region 5136	786 bp downstream
Tssr5137	transcription start site region 5137	945 bp downstream
Tssr144870	transcription start site region 144870	1197 bp downstream
Tssr144871	transcription start site region 144871	1163 bp downstream
Tssr144872	transcription start site region 144872	434 bp upstream
Tssr144873	transcription start site region 144873	990 bp upstream
Tssr144874	transcription start site region 144874	1048 bp upstream
Tssr144875	transcription start site region 144875	1986 bp upstream
Tssr148364	transcription start site region 148364	1408 bp upstream
Tssr148365	transcription start site region 148365	1368 bp upstream
Tssr148366	transcription start site region 148366	1346 bp upstream
Tssr148367	transcription start site region 148367	736 bp downstream
Tssr148368	transcription start site region 148368	759 bp downstream
Tssr148369	transcription start site region 148369	774 bp downstream
Tssr148370	transcription start site region 148370	796 bp downstream
Tssr148371	transcription start site region 148371	857 bp downstream
Tssr148372	transcription start site region 148372	880 bp downstream
Tssr148373	transcription start site region 148373	1911 bp downstream
Tssr148374	transcription start site region 148374	1923 bp downstream