rs244980546 SNP Detail

Summary

• ID
  rs244980546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116901306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT ATATATATTA
  CATAAATCAT TTTTTAAAAG ATTTCTCTTG GAATTGGAGA GATGGCCGAG GGTTAAGAGA
  ACTGACTGCT CTTCCAGAGG TCGAGTTCAA TTCCCAGCAA CCACGTGGTG ACTCACAAAC
  ATCTGTAATG GGATCCCATG CCCTTTTCTG GTGTGTCTGA AGACAGCGAC AGTGTACTCA
  Y
  ACACATAAAT AATTCTTTAG AAAATATTAA TTTTTGCCGG GCGTGGTGGC ACACGCCTTT
  AATCCCAGCA CTCGGGAGGC AGAGGCAGGC AGATTTCTGA GTTCGAGGCC AGCCTGGTCT
  ACAAAGTGAG TTCCAGGACA GCCAGGACTA CACAGAGAAA CCCTGTCTCA AAAACACCAA
  AAAAAAACAA AAACAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494038	CHEV_10_116502457	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244980546					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116901306 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1587 bp upstream
Cpgi2223	CpG island 2223	1363 bp distal
Rr402250	regulatory region 402250	1368 bp downstream
Rr439433	regulatory region 439433	1097 bp distal
Rr439434	regulatory region 439434	827 bp distal
Rr439435	regulatory region 439435	629 bp distal
Rr439436	regulatory region 439436	256 bp distal
Rr439437	regulatory region 439437	1468 bp proximal
Tssr99383	transcription start site region 99383	1649 bp upstream
Tssr99384	transcription start site region 99384	1599 bp upstream