rs244999769 SNP Detail

Summary

• ID
  rs244999769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78715604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTCCAT TAGGTTACAG
  ACTTGGTGCT ATTTCAGTGA ATGCTTGGAC TGGTAAGAAT TCTTTAGTTT TACTACTGAA
  ATGAAAAGAA ATTTAAAGTT TCTGTCAAGT TAAAAAGAAT CACTATTTCC TTATTCTTTT
  TTTGTTTTTT ATTTTCTTCC TTCCTTTCTT CTTTCTTTTG TTTTGTTTTG TTTTATTTGT
  K
  TTTTTTTTTT TTTTTTTTTT TTTGCTTTTA CAAGACAAAA CAGCCCTGTT TCTCTGTGTA
  ACAGCCCTGG GTGTCCTGGA ACTCGATTTG TAGAGCAGCC TGGCCTCGAA CTCACAGAGC
  TCCACCTGCC TCTGCCTCTG GAGTGTTTGG ATTAAAGGTG TGCACCTCCT TGCCTGGCTT
  GGATTATTCT TAAATCCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss383965031	MGP_WTSI_11_78638280	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs244999769					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383965031	MGP_WTSI_11_78638280	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78715604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	1651 bp proximal
D11Bhm78	DNA segment, Chr 11, Boehm 78	1212 bp distal
D11Bhm79	DNA segment, Chr 11, Boehm 79	200 bp distal
Gm23219	predicted gene, 23219	305 bp downstream
Lyrm9	LYR motif containing 9	1817 bp upstream
Rr452072	regulatory region 452072	1307 bp distal
Rr452073	regulatory region 452073	1778 bp distal
Rr452074	regulatory region 452074	372 bp proximal
Rr452075	regulatory region 452075	1341 bp proximal
Rr452076	regulatory region 452076	1743 bp proximal
Rr452077	regulatory region 452077	1817 bp proximal
Rr452078	regulatory region 452078	1826 bp proximal
Rr452079	regulatory region 452079	2000 bp proximal
Tssr103332	transcription start site region 103332	1797 bp upstream