rs245002296 SNP Detail

Summary

• ID
  rs245002296
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147018568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT TGATGAGAGA GGGGCAGGGC
  K
  GATCTGCAGG ACCTCCTGTG TACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
ss915739385	MGP_WTSI_2_147176648	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
rs245002296					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915739385	MGP_WTSI_2_147176648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147018568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	1645 bp proximal
Cpgi12377	CpG island 12377	1994 bp proximal
Nkx2-2	NK2 homeobox 2	898 bp downstream
Rr566759	regulatory region 566759	954 bp proximal
Rr566760	regulatory region 566760	1226 bp proximal
Rr566761	regulatory region 566761	1620 bp proximal