rs245007762 SNP Detail

Summary

• ID
  rs245007762
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136060924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGGCTG CTGGTCCAGC
  AGCTCCTACA GCAGTCAGAA CACCACCCGT GCACACACTC TGCCTGGCAC TGAACAGCCT
  GAGACAAAGA GGAGCCCTGC AGGTGTCTGG TGGGCTGGTG GGGCGGAGCC AGGCTGCCAC
  TGAAGCTGAC ATTGCAGCAG GAACCTTTGG AGGTCGAGGG AAGGGGAGCA CGCATGGGCC
  K
  GGTGGGAGTG AGACATGTCA ATATGGCATC TACAGCAGAT GGGGAGAGGG GAGCTACCTG
  CCGTAAAAAG AAAATGGAAG CCCAACCTCC AACCAGTGTG AACCTGGACT GACAGGACAG
  GAGACGGGGT GCTCTATCCA TGGGGTCTTT CCTTTAGACT CCATTTTACC GGAGAGAGCC
  AAACAAAGGC CTTCCCCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351559707	MGP_WTSI_1_138029763	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245007762					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351559707	MGP_WTSI_1_138029763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136060924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	919 bp distal
Kif21b	kinesin family member 21B	within coordinates
Rr367010	regulatory region 367010	1927 bp upstream
Rr396320	regulatory region 396320	1775 bp downstream
Rr419369	regulatory region 419369	1787 bp distal
Rr419370	regulatory region 419370	1767 bp distal
Tssr9041	transcription start site region 9041	1805 bp downstream
Tssr9042	transcription start site region 9042	1782 bp downstream
Tssr9043	transcription start site region 9043	1745 bp downstream
Tssr9044	transcription start site region 9044	1692 bp downstream
Tssr9045	transcription start site region 9045	147 bp downstream
Tssr13915	transcription start site region 13915	118 bp upstream
Tssr13916	transcription start site region 13916	1922 bp downstream
Tssr13917	transcription start site region 13917	1970 bp downstream
Tssr13918	transcription start site region 13918	1994 bp downstream