rs245013915 SNP Detail

Summary

• ID
  rs245013915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61007579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTTC TCCTGGTGGG
  CATGAAGCTA AGCACCTCCT CTGGCCCTCT GGCCCCAAGC TAATCAGTTT AGACACTCCA
  ACCTGTGCTT CTCTAGGCTG CCCATGTTGA GAAGTTGCTG GGATCTTAGG ATTATAGATT
  ACAGGTTGAA CCCAGAGCTT CTGAACTTGG ACGTCCAGAT TAGACTCCTG TGTGTGTGTG
  Y
  GCGCGCGCAC AAATATATGT GTGTGCACAA ATATTTATAT GTGTATGATG TATGGAAGTT
  GATGTTTAAT GTATTCTTTT ATCTCTCCAT CTAAAGTCTT TGAGGCAGGG TCTTTCGATG
  ATTTGTCCAC ACTGGCTGGA CAAACCCCAG GGAGACTCTC ATCTCTGCAC CCAGCACTGG
  GACGATAGGC ATGTGCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss377768732	MGP_WTSI_9_60948104	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245013915					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377768732	MGP_WTSI_9_60948104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61007579 () rs orientation: forward

Symbol	Name	Function Class
D9Mit72	DNA segment, Chr 9, Massachusetts Institute of Technology 72	1303 bp distal
Gm34004	predicted gene, 34004	within coordinates
Rr196206	regulatory region 196206	1422 bp proximal