rs245039121 SNP Detail

Summary

• ID
  rs245039121
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43059672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atggtagcc ccactggtaa cctcatcact
  ttgggagaca gagacaagtg atccccaagg caagtgagct agctagactg gctacccaat
  tagcaagctc tgagttcaat gaaagaccct gcctccttaa acaatgtaga cagtgattca
  K
  gaaggtacct ggctccccca cacacttatg tgcacaTGTG TGCATCCATA CACACATGGC
  ATGTCCACCA CATACATTCA AAATCAAGCG GAGGAGGGCA CACCATCCCG GGTGTGCCTG
  TACCCTGAGA GGCGATGGTT GCTTCATTTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196846	CHEV_7_50665618	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245039121					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43059672 () rs orientation: forward

Symbol	Name	Function Class
Rr645954	regulatory region 645954	1674 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65986	transcription start site region 65986	1992 bp downstream
Tssr65987	transcription start site region 65987	1975 bp downstream
Tssr65988	transcription start site region 65988	1963 bp downstream
Tssr65989	transcription start site region 65989	1730 bp downstream
Tssr65990	transcription start site region 65990	1709 bp downstream
Tssr65991	transcription start site region 65991	986 bp downstream
Tssr65992	transcription start site region 65992	975 bp downstream
Tssr65993	transcription start site region 65993	947 bp downstream
Tssr65994	transcription start site region 65994	828 bp downstream