rs245040355 SNP Detail

Summary

• ID
  rs245040355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128768801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTTCT GTTGATTCAT
  TCAGAGACCA ATTCACTATG TAGCTTTGTA GGCTGGGCTG ACTTCAGCCT TGTTCACTGC
  TGAGATTGCA GGTCTGGGTC TTCAAGCCTG GCTTCCCATC CCCCTCTTAG GTTTTGAGAC
  AGGGCTGCAC TCTGTAGCTC TGACTGGCCT GGAACTCTCC CTGTAGACCA AGTTGCTTTC
  R
  AGATGACAGA GATCTTCCTG GCTCTGCCTA TTGAGTGCTG GGAATATAAG CGCGTCCTAC
  CACACCCAGC TTGCCATCCT TTTTTTGTTG CGTTGGAAAT GACCAGTCTC TGGAAGGACC
  TGATAGCAGG ATCTTTGTCT CTTAGGTCCA GTGTCTTTCA TTTTTGCCCC CTTTTAGCTC
  TCTCTTCCCT CTCCACAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536803	CHEV_10_128369988	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245040355					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128768801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	819 bp proximal
Itga7	integrin alpha 7	844 bp upstream
Rr441373	regulatory region 441373	1125 bp distal
Rr441374	regulatory region 441374	393 bp proximal
Tssr96480	transcription start site region 96480	819 bp upstream
Tssr96481	transcription start site region 96481	844 bp upstream
Tssr96482	transcription start site region 96482	850 bp upstream