rs245050889 SNP Detail

Summary

• ID
  rs245050889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134272169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGGTGTG TGTGTGTTGT
  GTGTGTGTGT GTGTGTGTAT GTGTGTACCC TGTATGGTAC AGAGTGCAGA GTGTTTGGGA
  TGCTGGGTGC TCGGTGTTCA AAGTAGAGTG TGGGTAAAGA GTGCTGGATG CGGTGCAGAG
  TAGACAGTGC AGGGTGAGGA CCATACAGTG CAGATTAGTA GGTGCGAGGT GCACGGTGTT
  Y
  AGTGGAAAGT AGAGGATGTG AGTTGCACGG TTCCTGCAGC ATGCAGGGCG TCCATGGGCT
  CCGGGAAGCA GCCTGGGTCC CTCGAGGGAC CCGGCGGGCC GAGCCCCAGG GCACGCGCGC
  CTGGGCGGGC TACAGCCGGC CGCCGTCCCG CCTCTCGCCG GCGCTCCCGG CCTTTCCCAT
  CCGGCCCGCG ACGCTCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457598	CHEV_7_141862123	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245050889					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134272169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	within coordinates
Dock1	dedicator of cytokinesis 1	247 bp upstream
Rr656983	regulatory region 656983	607 bp distal
Rr656984	regulatory region 656984	within coordinates
Rr656985	regulatory region 656985	258 bp proximal
Tssr69615	transcription start site region 69615	734 bp downstream
Tssr69616	transcription start site region 69616	210 bp upstream
Tssr69617	transcription start site region 69617	227 bp upstream