rs245052603 SNP Detail

Summary

• ID
  rs245052603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100975651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCATAAG GCTCTAGGAG
  TAGGGAAGTT TAAGGGGTTT TCGCAAGAGC TGGGAACTCC GAGGGGCTCC GGGTAACCAA
  TGGTCCACTG GTGAAAGTAA GCGCAGTTTC GTGCAATACC CCAACTCTGA GCTGGGACTA
  CTGTCCCAGC CTGAGGAGAA ACGAAGGGCG TGTGCGTTAG GGGCGCAGGG ACCGAAATGG
  Y
  CTCAGTCTCC TGTCACTGCC CCGTCACGAT GCTGGGGAAT CTCCAGGCCA GTAACCCAGC
  CCCCACCCCC TCCCGCACAC ACAGGGGCCG CTGGACAAAG ACCTGACGGA GTGGGAGGGG
  CCTGCGGGCC GGCCCTCGGG CTCAGGCCGC CGGACCCTTC TGGGACCCGA ACCCGCAAAT
  CCTAGCTCCC TCTCCCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395190026	MGP_WTSI_15_100908201	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245052603					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395190026	MGP_WTSI_15_100908201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100975651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	within coordinates
Fignl2	fidgetin-like 2	within coordinates
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	108 bp upstream
Rr509897	regulatory region 509897	1383 bp distal
Rr509898	regulatory region 509898	within coordinates
Rr509899	regulatory region 509899	119 bp proximal
Rr509900	regulatory region 509900	787 bp proximal
Rr509901	regulatory region 509901	1317 bp proximal
Tssr133183	transcription start site region 133183	111 bp upstream
Tssr136514	transcription start site region 136514	599 bp downstream
Tssr136515	transcription start site region 136515	640 bp downstream
Tssr136516	transcription start site region 136516	719 bp downstream
Tssr136517	transcription start site region 136517	1037 bp downstream
Tssr136518	transcription start site region 136518	1112 bp downstream