rs245052788 SNP Detail

Summary

• ID
  rs245052788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143203939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGCTACA ACACACACTG TCTTAGCTCA
  ACACGGAGAA GTTTGAAGTA ACTCTATCCC TGTAGCGTTC CTGTGAGTGT TCACTGGTCA
  ATGGTCTGGA GCAGCAGCTG AAGGCTTCAC TGTCAGGGTC TGAGGGGCTG TGTGGGACTC
  R
  CTGACTCTGA GGACCTCAAA ATATCCAGGA CTGGTAGGCA CTCTTCCAGT TCTGGGGTTG
  GGGGGTGTGT GTCGGGGGAG GAGGGCTGTA TGAACATCCC TGGACTGTGA GTCCCTCACC
  TCTTCTTCCT TTCACTGTGT TTAGCTCCAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322477209	CHEV_7_150836107	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245052788					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143203939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19986	CpG island 19986	491 bp distal
E230032D23Rik	RIKEN cDNA E230032D23 gene	within coordinates
Rr167026	regulatory region 167026	338 bp distal
Tnfrsf22	tumor necrosis factor receptor superfamily, member 22	541 bp upstream
Tssr75968	transcription start site region 75968	597 bp upstream
Tssr75969	transcription start site region 75969	531 bp upstream