rs245060115 SNP Detail

Summary

• ID
  rs245060115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174135729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCTCTG GAGCCTGCCC
  TGCTCTCTCT CTCTCCTTCT GGCCTCTCCT TGGCTGTATC CCTCCACTGG AGAAATTTTA
  TCTGGTTCAT TTATCTCAAA CCTTAGTAAG GCTGATGGAC AATTTGAATT TTTGCCTTGT
  ACCCTTCTCC TAAACTTCAG ACCTTTCCTT CCCAGGAATT TATTGTAAGT GTATGTGTAT
  R
  TGTGTGTGTG TGTGTATATA TATATATATA TATATATATA TGTATATATA TATATGTATA
  TATATATATA CACACACACA CATATATATA CATATACACA TACATATATA TATATAGTAA
  ATATATATTG TATATTGTGT GTGTGTATAT ATATATATGT ATATATATAC ATATATGTAT
  ATCAAATCGT CCATCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss356686874	MGP_WTSI_2_174119437	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs245060115					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356686874	MGP_WTSI_2_174119437	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174135729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	1261 bp proximal
Gm56458	predicted gene, 56458	1135 bp upstream
Gm56459	predicted gene, 56459	1401 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374311	regulatory region 374311	364 bp upstream
Rr572094	regulatory region 572094	288 bp proximal
Rr572095	regulatory region 572095	1460 bp proximal
Rr572096	regulatory region 572096	1513 bp proximal
Tssr22102	transcription start site region 22102	816 bp upstream
Tssr22103	transcription start site region 22103	1676 bp upstream
Tssr28008	transcription start site region 28008	222 bp downstream
Tssr28009	transcription start site region 28009	1465 bp downstream