rs245060561 SNP Detail

Summary

• ID
  rs245060561
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103218065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACACGTA CTGTTTCATA
  TTTTTTTAAA TGCGCACATA CTCAAATGGA TTATACAAAC TTCCAACTTT CAAATAATAA
  ATGAGCATGT CCCCCTCCTC CCTCCCGCCC TTCCTCCCAT CTTTCCTCCC TCCCCAACCC
  TCCCACAGTC CTAGACCTAA GTAAGGGCTG ACTGTCCCTA CTAACCACTC CTGCGTTACT
  S
  GGTCACTGCC AGGTGACTTC TAGAAGCGCT GCCTCCCGCT CCCTGCCTGC TCCTAGCCTA
  GAAGCCTTAA CCAACAAAAC CTAAAGCTCG GCAAACAGCT GAAGAGAAAG GGCGCCTCCG
  CAGGCAGGAG GATTGCTTTC TACAATTTTA AGCCACAGGA GATCTAATGT GTTGGGGGTA
  AATAGAACTC TCCCCTGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392294220	MGP_WTSI_14_103379846	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245060561					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294220	MGP_WTSI_14_103379846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103218065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6810	CpG island 6810	420 bp proximal
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Mir5130	microRNA 5130	1920 bp downstream
Rr404259	regulatory region 404259	719 bp downstream
Rr496944	regulatory region 496944	1936 bp distal
Rr496945	regulatory region 496945	468 bp distal
Rr496946	regulatory region 496946	923 bp proximal
Rr496947	regulatory region 496947	1100 bp proximal
Rr496948	regulatory region 496948	1294 bp proximal
Rr496949	regulatory region 496949	1998 bp proximal
Tssr126949	transcription start site region 126949	502 bp downstream
Tssr126950	transcription start site region 126950	667 bp upstream
Tssr126951	transcription start site region 126951	738 bp upstream
Tssr126952	transcription start site region 126952	806 bp upstream
Tssr130057	transcription start site region 130057	1954 bp upstream
Tssr130058	transcription start site region 130058	863 bp upstream
Tssr130059	transcription start site region 130059	832 bp upstream
Tssr130060	transcription start site region 130060	106 bp upstream
Tssr130061	transcription start site region 130061	829 bp downstream