rs245061891 SNP Detail

Summary

• ID
  rs245061891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62313375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCTCCTC CTGGGGTTAG
  CCCGGGCGGG GCCCAGCGGC TCCCCGGAGG CCAGGCCACC GCTCCCTTCC AGCTACCCTA
  GCTGGGGCAC CAGAGAGAGA AATCTAGGGC TGCTGTGCAA CCCGCCAACC AGGCGCTGTC
  TGGAGGTGCT ACCTGTCCGT TCAGGTCACC TGTGCGGGCT GAGAGGTCTC TGGACGCCAG
  Y
  AGCGCAGGGT GCGTTTTCTT TTAGGAACAG AAAGAGCAAG CTCACCCGGA CACGCACACA
  CAGGCACAAA CGCACCCTGA CGACCAGGAC ATGCTCAGAC TTATGCCGAA CCACAGCCAC
  AGCCACGGAG ACACACCCGC GCCCGCTCAT TCTGGAGATG ACAGCTGTCT CCTGGTCCAA
  CAGAGAGGTG GCTGTAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325649284	CHEV_18_62339958	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245061891					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62313375 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	345 bp upstream
Cpgi10125	CpG island 10125	within coordinates
Gm9949	predicted gene 9949	within coordinates
Rr393783	regulatory region 393783	within coordinates
Rr539064	regulatory region 539064	1392 bp distal
Rr539065	regulatory region 539065	1281 bp distal
Rr539066	regulatory region 539066	99 bp distal
Rr539067	regulatory region 539067	within coordinates
Tssr151487	transcription start site region 151487	122 bp downstream
Tssr153623	transcription start site region 153623	318 bp upstream