rs245073443 SNP Detail

Summary

• ID
  rs245073443
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69302185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGATGG CCGACACACT
  TCTGAGGCTG ACAATCCAGC CTTCCCAACC CGACCTACAG CCCCCAAAAG CCGGCCGCCC
  AGAAAGGGTT AATTCCACTT GAGTCGAAAC CACGCCCTCT CCATCCGGGC ACTCCCGGTA
  AAGCCAAGCT CCGCCTCCCG CATCCGGGAT CTGGACTCTA GGACTTTAAC CGACCCCCCC
  M
  CACACACACA CCTCCCTTAG TCCCAGGAGA GAACTACTCC ATCAATCACA CCCACTTAAC
  TCTCTCTGGG CTTGGGTCAG AAGAGCCCCT CCGCGCAGCT CACGGAACGC GGGGTATAAG
  AGGGACGCTT GGCACGAGGC CTGCGACCCG CAAGCAGACA CTGGACGACC AAAGACACCA
  GACCCCGCAG AACGATTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783483	MGP_WTSI_11_69224861	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	A	C	C	C	C	A	C	A	A	A	A	A	C	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245073443					SNP	C	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	A	C	C	C	C	A	C	A	A	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783483	MGP_WTSI_11_69224861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69302185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	within coordinates
Gm72933	predicted gene, 72933	1462 bp upstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1376 bp downstream
Rr402671	regulatory region 402671	1699 bp downstream
Tssr102458	transcription start site region 102458	1670 bp downstream
Tssr102459	transcription start site region 102459	1639 bp downstream
Tssr102460	transcription start site region 102460	1614 bp downstream
Tssr102461	transcription start site region 102461	1580 bp downstream
Tssr102462	transcription start site region 102462	1547 bp downstream
Tssr102463	transcription start site region 102463	777 bp downstream
Tssr102464	transcription start site region 102464	505 bp downstream
Tssr102465	transcription start site region 102465	384 bp downstream
Tssr102466	transcription start site region 102466	243 bp downstream
Tssr102467	transcription start site region 102467	17 bp downstream
Tssr102468	transcription start site region 102468	within coordinates
Tssr102469	transcription start site region 102469	38 bp upstream
Tssr102470	transcription start site region 102470	606 bp upstream
Tssr108667	transcription start site region 108667	1948 bp upstream
Tssr108668	transcription start site region 108668	1937 bp upstream
Tssr108669	transcription start site region 108669	1914 bp upstream
Tssr108670	transcription start site region 108670	1790 bp upstream
Tssr108671	transcription start site region 108671	1453 bp upstream
Tssr108672	transcription start site region 108672	979 bp upstream
Tssr108673	transcription start site region 108673	927 bp upstream
Tssr108674	transcription start site region 108674	906 bp upstream
Tssr108675	transcription start site region 108675	743 bp upstream
Tssr108676	transcription start site region 108676	692 bp upstream
Tssr108677	transcription start site region 108677	652 bp upstream
Tssr108678	transcription start site region 108678	623 bp upstream
Tssr108679	transcription start site region 108679	318 bp upstream
Tssr108680	transcription start site region 108680	306 bp downstream
Tssr108681	transcription start site region 108681	337 bp downstream
Tssr108682	transcription start site region 108682	380 bp downstream
Tssr108683	transcription start site region 108683	1898 bp downstream