rs245073615 SNP Detail

Summary

• ID
  rs245073615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAAAAAAA AAAAAAAAAC CCTTAAAAAC
  TTTAAAGGCC AAGGAACTCT TTGGGCTCTG TAGCAACACG CGAGGATGAT GGTGGAAGGG
  TTTGGGGAAT ACTGACTTCG AGGAGATTCT TTCAATTTCT TTAGAAGTTC CATTTTCCAC
  R
  TTGATGTTAT GGGCATTTTC AAGAGTGGCC CTCCTAGCAC AATAGAAACG TGATCATTAT
  GGTGAAATAT TGCCATAATT ACGAGAAGCT GCGGTGGCGG TTAGGGACCA GCAGCACTTG
  CTTAAAGAGA CGACTAAAGG GAAGGATTGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322347451	CHEV_7_107006961	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245073615					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	57 bp proximal
Rr400465	regulatory region 400465	377 bp upstream
Rr652012	regulatory region 652012	438 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	608 bp upstream
Tssr68078	transcription start site region 68078	672 bp upstream
Tssr73711	transcription start site region 73711	148 bp upstream
Tssr73712	transcription start site region 73712	421 bp downstream
Tssr73713	transcription start site region 73713	459 bp downstream
Tssr73714	transcription start site region 73714	541 bp downstream
Xrra1	X-ray radiation resistance associated 1	767 bp upstream