rs245083231 SNP Detail

Summary

• ID
  rs245083231
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:81911701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGACTTT TAATGTAAAC ACCGGCAGTC
  TACTCCTGCC TAGTGACACC AAGCGGTCTC TGGTAGGTGG CTAACCTTTC CTACCGAATC
  TTGTTTAAGA ACTGACAGAG AGGTggggct gtagaggtgg ctcagcagtt aagagaacat
  W
  tcctgtccat gcatcgtacc caggttctgg tcccagcatc cacatggtgg ctcacagcca
  accatacttt ggtttcagga gactagaccc cttctgacct ctgcatgcat gaggcatgca
  cgaggcgtgc acatgctgca catacataca                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033187	CHEV_15_81857930	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245083231					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81911701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr506381	regulatory region 506381			142 bp proximal
Tssr132336	transcription start site region 132336			525 bp upstream
Tssr132337	transcription start site region 132337			554 bp upstream
Tssr132338	transcription start site region 132338			589 bp upstream
Tssr132339	transcription start site region 132339			611 bp upstream
Tssr132340	transcription start site region 132340			1008 bp upstream
Tssr132341	transcription start site region 132341			1703 bp upstream
Tssr135523	transcription start site region 135523			349 bp downstream
Xrcc6	X-ray repair cross complementing 6			Intron
				Noncoding-Transcript-Variant