rs245084943 SNP Detail

Summary

• ID
  rs245084943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCAGGA AATAGAGCCT
  TGGGAGTCTG GGTTCATCTT GTGAAACAGG GCTCACACTC AACTGCTCCC AGTCCGGCTC
  TACCATTCTG CTAGGATGGA GCAGGACCAC ACTCTGTCCT TTGGACAACT CTAAAGTCTT
  AGCTGACCGA GCTGATACAC CTCTAGGTTA AAGTCACTAG GGACAGGGGT GTACAGAGCA
  Y
  ACTGCCGCCA GCTGTCTCCT CTAGAGATGG CTCGGGCTGC ACACGCCCTC CTGGTTTAAA
  GAGAAGATGA GGATTCCAGA CCCTGCACAT GGTAGGGCTG TGCCCGCTTG TCTTCTCGTT
  TTTTTTCCTG TGTGTGTGCG CGCGCGCGGG CGTGCACTCT TCTCCAGGAT GGCCTGGGGT
  GACGGTGTCA CATTTCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329088	CHEV_4_131474569	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245084943					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1891 bp distal
Cpgi14947	CpG island 14947	1057 bp proximal
Gm12992	predicted gene 12992	within coordinates
Rr85750	regulatory region 85750	1365 bp distal
Rr85751	regulatory region 85751	765 bp distal
Rr100128	regulatory region 100128	within coordinates
Tssr39357	transcription start site region 39357	1914 bp upstream