rs245113117 SNP Detail

Summary

• ID
  rs245113117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80820745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTGGAG CGATGCTAGC
  TGCTACAGCC GGGCTCCCGC GCGACCCTTG TCCGCAAGGC TCTGTGGCTT TCCAGAACGG
  CCGGCCGCTG CAGGGCCAGG TGAGCCTCCC CACAGCACCC CAGGGCCCTC GGCGCCTCTG
  GTCCCCAAAC CCCGGCCCCG GCCCCCGCGG GCATCGGACA CTGCGTCTTG CACCGAGCCC
  K
  CCTCGGGCCC CAGCTCGGCC CCGCCGCAGT GCGCAGACCC GAAGCCCGCG CCGCAGGGAG
  CTCGCCGCCA GGCCTTACCG CACGCGCCCC TCAGCCCTCC GCCGAGGTGA CGGCGGCGCA
  GGTGGCGGGC GCAGAGGCAG CTGCGACCAG CGAGTCCCGC CGCCGCCCGC GCCACCGCCG
  CCACCGCCGC CGCCGCCGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358619914	MGP_WTSI_3_80717360	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245113117					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358619914	MGP_WTSI_3_80717360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80820745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	within coordinates
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	within coordinates
Gm65109	predicted gene, 65109	within coordinates
Rr578673	regulatory region 578673	207 bp distal
Rr578674	regulatory region 578674	within coordinates
Rr578675	regulatory region 578675	80 bp proximal
Tssr33773	transcription start site region 33773	104 bp downstream