rs245118885 SNP Detail

Summary

• ID
  rs245118885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGTTCT GTGAGGCAGC
  TGACTGAGCA CGTGAGTGCT GCCTTGTGGT TGGTTGGTGG GTGGGTGGGT GGGTGGGAGC
  TGCCCAGCCA CCACAGTTCA GCAAAGTGCA GGTTTGGCTT TCTCCATCTC CCAGCAGCCA
  TCTTGGCTAG CCAGAGAGCA AAGTCTAAAA CCCGCTGTGG GATAGATGGT GCCTTCCCCG
  W
  GGTTGATTTT CACAACACTT GGGCTTTTCT TCTTGAAGCC CTCGGGAGAG CAGATTATGA
  TGTTTCAATA ACACCCGTGA AGGTTGCCTT GGGCAGGTTA CCTCCCACAA CCCTGCCAAG
  ACGCTCCCTG AATGAGCAGC CAGAGTATAT ATACTGCTTC AGAATGCCGG CATCTGATTT
  CTTTCCCAGG CGGTGGAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628350	MGP_WTSI_16_22894678	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245118885					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628350	MGP_WTSI_16_22894678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713355 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	219 bp upstream
Tssr4818	transcription start site region 4818	1781 bp downstream
Tssr4819	transcription start site region 4819	726 bp upstream
Tssr4820	transcription start site region 4820	1342 bp upstream
Tssr137559	transcription start site region 137559	1828 bp downstream
Tssr137560	transcription start site region 137560	1785 bp downstream
Tssr137561	transcription start site region 137561	1760 bp downstream
Tssr137562	transcription start site region 137562	1434 bp downstream
Tssr137563	transcription start site region 137563	364 bp downstream
Tssr137564	transcription start site region 137564	334 bp downstream
Tssr137565	transcription start site region 137565	197 bp downstream
Tssr137566	transcription start site region 137566	188 bp downstream
Tssr137567	transcription start site region 137567	172 bp upstream
Tssr137568	transcription start site region 137568	191 bp upstream
Tssr137569	transcription start site region 137569	222 bp upstream
Tssr137570	transcription start site region 137570	237 bp upstream
Tssr137571	transcription start site region 137571	571 bp upstream
Tssr137572	transcription start site region 137572	594 bp upstream
Tssr137573	transcription start site region 137573	688 bp upstream
Tssr137574	transcription start site region 137574	709 bp upstream
Tssr137575	transcription start site region 137575	715 bp upstream
Tssr137576	transcription start site region 137576	1395 bp upstream
Tssr137577	transcription start site region 137577	1817 bp upstream
Tssr137578	transcription start site region 137578	1888 bp upstream
Tssr140504	transcription start site region 140504	213 bp upstream
Tssr140505	transcription start site region 140505	164 bp upstream
Tssr140506	transcription start site region 140506	225 bp downstream
Tssr140507	transcription start site region 140507	608 bp downstream
Tssr140508	transcription start site region 140508	652 bp downstream
Tssr140509	transcription start site region 140509	671 bp downstream
Tssr140510	transcription start site region 140510	686 bp downstream
Tssr140511	transcription start site region 140511	729 bp downstream
Tssr140512	transcription start site region 140512	1952 bp downstream
Tssr140513	transcription start site region 140513	1963 bp downstream
Tssr140514	transcription start site region 140514	1996 bp downstream