rs245122758 SNP Detail

Summary

• ID
  rs245122758
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTAAAC TCGGGTCCTC
  TGGAAGAGCA GCAAGTGCTC TTAGCCACTG AGCCATTTCT GTAGGTCCTG GTATGTCTCT
  CTCTCCTCCT TCCTGGGCTC CATCCATACT AGCCTTCTCC TTGCTAAGGA CTAAGCCAAA
  CTCTATCTTG GGACCTTTTA TTTTTATTTT TTATTATTTT TATATTTTTA TATATATATT
  W
  TTTTTTGCCC AGAAACCATT CAGCTTTGGG TATAAATACT TCTTCCCTTT TTTCTTCTTT
  TTTTCCTTTT TAAAAATATT TGTTTGTTTA ATGTATGTAA GTATACTGTT GCTATCTTCA
  GACACACCAG AAGAGGGCAT CCAATCCCAT TACAGATGGT TGTGAGCCAC CATGTGGTTG
  CTGGGAATTG AACTCAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743407	MGP_WTSI_7_19759807	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245122758					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743407	MGP_WTSI_7_19759807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1264 bp distal
Cpgi18450	CpG island 18450	1836 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1963 bp upstream
Gm71808	predicted gene, 71808	1641 bp downstream
Tssr64790	transcription start site region 64790	1958 bp upstream
Tssr64791	transcription start site region 64791	1988 bp upstream