rs245124779 SNP Detail

Summary

• ID
  rs245124779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATACTGG TACAGGGAGT
  GGGTAAAAAT GGTAATTTAT GGGTGATTAT CAGTCTGTAT AAAAGTGATA AAAGCTGATT
  TTAGGTAGTG TTTATTCAGG AAAACTTTAT TTTTATTTTC TCACCCCTTC CCTTTTCCCT
  TCCTAATCAG TGCTTTGGTT TTACCTTAAC AGGTGAACGC TTATGCTATG AAGAAGATAG
  Y
  TGGTTCAGGT TTCTTAGTCA GCCAAGTGGA AATTTCAGTG TGAAGTGATG AAAATTTAGA
  GTTATGAAAG TAAAAAATGA AGTTACAGAA TTGGGTGTCT ACTAGGTACT TTATTTCTGG
  GTTCAAGCCC CCCCCCATTT GTAGATATAT ATATACCTTT ATCTAAGACC TTTAGCTATT
  CACATCGAAG TGAATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235734	CHEV_16_70313028	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245124779					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	1053 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1166 bp upstream
Rr517848	regulatory region 517848	676 bp proximal
Tssr138939	transcription start site region 138939	1184 bp upstream
Tssr138940	transcription start site region 138940	1215 bp upstream
Tssr138941	transcription start site region 138941	1228 bp upstream
Tssr138942	transcription start site region 138942	1274 bp upstream
Tssr138943	transcription start site region 138943	1308 bp upstream
Tssr138944	transcription start site region 138944	1336 bp upstream
Tssr138945	transcription start site region 138945	1694 bp upstream
Tssr138946	transcription start site region 138946	1884 bp upstream