rs245146735 SNP Detail

Summary

• ID
  rs245146735
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29477289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCAAGG CTACATAGTG
  AGACCCTGTC TTAAAAAAAA AAAAAAAAAA AAAAAAAAAG GTTTAAGGAA TCCTATGCTT
  TCTGAGCACT TCCTTTTACT CCCTTGCATG ATTAAAGCAA TGCATTCTCT CTTTCTTCTC
  TGTCTCCCTG CCCCTTCACT CCATCTCCTT CCTCCTCCTC CTCTTTCTTC TCTTATCTTT
  K
  GCATTTTCTT TTGAAAGGTG GTTTCCCTGA TATACCTAGC CTGGCCTTGA GCTCCCTATG
  TAGCTAAGAC TGAAGACTGG CTTTGAACTT GGCATCCTCC AGCCTTTGCC TAGAGTTGCC
  TGTGCCAGCA GGCCTGGCTT GAATTTCTAA ATCTTAGTTC ATTTACTTGG AATGAAGTCA
  GAATTTCTTT TGATCCTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382841092	MGP_WTSI_11_29427289	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245146735					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382841092	MGP_WTSI_11_29427289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29477289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	563 bp distal
Gm57396	predicted gene, 57396	905 bp upstream
Mtif2	mitochondrial translational initiation factor 2	within coordinates
Rr369145	regulatory region 369145	886 bp downstream
Rr444173	regulatory region 444173	916 bp distal
Rr444174	regulatory region 444174	822 bp distal
Rr444175	regulatory region 444175	144 bp distal
Rr444176	regulatory region 444176	1653 bp proximal
Tssr100719	transcription start site region 100719	869 bp downstream
Tssr100720	transcription start site region 100720	815 bp downstream
Tssr107213	transcription start site region 107213	910 bp upstream