rs245148297 SNP Detail

Summary

• ID
  rs245148297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80072810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTTGGC TGAAATGTTA
  GAGCAACAGA TGCCCAAGGT ACTTGTTAGG TGCTTCTTTG TTTCTTCTTT CAGTGGAATG
  AAGAGATGTA ATCGTTCTCT CTTCAGCAGA GTGAGGTGGT TTTTAAGAGA TTCCACATAA
  CACACATGCA CACACACACA CACACACACA CACACACACT TATGTTTTTT AAATGACAGA
  R
  CCTCATGTGG TCCAGGAGGC ACTGTCTTTC TCCTTTCCTT TCCTTTCCTT TCCTTTCCTT
  TCCTTTCCTT TCCTTTCCTT TCCTTTCCTT TCCTTTCCCT TCCCTTCCCT TCCCTTCCCT
  TCCCTTCCCT TCCCTTCCCT TCCCTTCCCT TCCCTTCCCT TCCCTTCCTT TCCTTTCCTT
  TCCTTTCCTT TCCTTTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761714	CHEV_11_79995486	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245148297					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80072810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	1777 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	911 bp distal
Rnf135	ring finger protein 135	1867 bp upstream
Rr386348	regulatory region 386348	165 bp downstream
Rr402781	regulatory region 402781	1731 bp upstream
Rr452449	regulatory region 452449	400 bp distal
Rr452450	regulatory region 452450	1377 bp proximal
Rr452451	regulatory region 452451	1384 bp proximal
Rr452452	regulatory region 452452	1571 bp proximal
Tssr3599	transcription start site region 3599	1923 bp upstream
Tssr103509	transcription start site region 103509	1877 bp upstream
Tssr103510	transcription start site region 103510	1902 bp upstream