rs245161021 SNP Detail

Summary

• ID
  rs245161021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77105827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTTCAC TCTGGAGCTC
  TGGGGATAAC GTTGTTTCTC ATCTGTGAAC CACAGTTCTT CAATTCTCAT CTCATAGGCA
  GTCTTGATCA CCACCAGGGG GCAAAAGCCT ACCAACTGGT TTTTCTGCAC TACACTCTAC
  AGAGGACTGG CACAGTACAG GGACCCTCAG TGACTCTTGA TGGAACCTCC CTGCTAATTA
  Y
  TTCAACCACA GGGCCCCAGG GAGAGAACAA AGACTCAGCA TAGAGGGTTC TTGTGTCACT
  TAACCACACA GCAACCAGAA AGAGCTTATG ACAGCCCTAT CAGTTTAAAA GGAGCAATGA
  GATCCAAGAT TGTTTGAGTG ACAAACAGAA AGAGGTGGGC TTTAGAAACT GGAGTCCATA
  AGTGAGTGTT TTCTACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755102	CHEV_11_77028503	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245161021					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77105827 () rs orientation: forward

Symbol	Name	Function Class
6330571C24Rik	RIKEN cDNA 6330571C24 gene	1795 bp upstream
Cpgi3303	CpG island 3303	692 bp proximal
Gm45027	predicted gene 45027	within coordinates
Rr402749	regulatory region 402749	503 bp downstream
Rr402750	regulatory region 402750	within coordinates
Rr451639	regulatory region 451639	205 bp distal
Rr451640	regulatory region 451640	93 bp distal
Rr451641	regulatory region 451641	796 bp proximal
Rr451642	regulatory region 451642	1175 bp proximal
Rr451643	regulatory region 451643	1578 bp proximal
Ssh2	slingshot protein phosphatase 2	1286 bp upstream
Tssr103125	transcription start site region 103125	1170 bp upstream
Tssr103126	transcription start site region 103126	1179 bp upstream