rs245171188 SNP Detail

Summary

• ID
  rs245171188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58085611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGGGTAGt gtttatgtcc acgaccattt
  aattatgata tatctacaaa ggtataattg cagagttagt gagcatgtga attttaaaat
  tatttttatg tcttccaaat gaattgtctc ccagaaggac tccaagagag catatttcca
  Y
  tcttatgagt ggtaggggtc ccatttcccc aggcctttat taataatgga cattatgatt
  ttttaaagta tttatgattt tatttgataa aatgtgttta tccttgttta gttcaaatcc
  ttgcagatta ctgtgggctt tgagcatgtg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319736007	CHEV_1_58103296	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245171188					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58085611 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	within coordinates
Gm69841	predicted gene, 69841	1109 bp upstream
Tssr11773	transcription start site region 11773	1176 bp upstream