rs245173622 SNP Detail

Summary

• ID
  rs245173622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69489602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGGATG GGTGGGTATG
  GGGGACTTTT GGTATAGCAT TGGAAATGTA AATGAGCTAA ATACCTAATA AAAAATGGGA
  AAAAAAATTA AAGTTAGGCC AGGACTGGGG AGATGACTCA GAGGTTAAGA ATGCACACCG
  GTGTTACAAA GTACCTGTGC TTCTTGCCCA GCACTCATGT AAGACAGCTC ACAAGTGCCC
  M
  TAACTCCTGT AACTGCAGCT CCAGGGGAGC CAAACCTCTG GCCTCCTCAG TCAGTGCACC
  CACGTACACA AACCCACACT CAGACGCACA TGCAGATACA TCATTTCTTT TTTTTTTTTT
  AAATAAAAAT TGAAGTTAGG GGCTGGCACA CACTTGCAAT CCCTGTATTC AGGAAGGAAA
  GCTCAGAGGA CTAGGAGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787264	MGP_WTSI_11_69412278	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245173622					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787264	MGP_WTSI_11_69412278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69489602 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	960 bp downstream
Rr386229	regulatory region 386229	631 bp upstream
Rr450033	regulatory region 450033	772 bp proximal
Rr450034	regulatory region 450034	813 bp proximal
Rr450035	regulatory region 450035	1265 bp proximal
Tssr3544	transcription start site region 3544	1919 bp downstream
Tssr102487	transcription start site region 102487	1237 bp upstream
Tssr108712	transcription start site region 108712	1231 bp downstream
Tssr108713	transcription start site region 108713	1376 bp downstream
Tssr108714	transcription start site region 108714	1458 bp downstream
Tssr108715	transcription start site region 108715	1471 bp downstream
Tssr108716	transcription start site region 108716	1783 bp downstream
Tssr108717	transcription start site region 108717	1808 bp downstream
Tssr108718	transcription start site region 108718	1867 bp downstream
Tssr108719	transcription start site region 108719	1878 bp downstream
Tssr108720	transcription start site region 108720	1882 bp downstream
Tssr108721	transcription start site region 108721	1896 bp downstream
Tssr108722	transcription start site region 108722	1977 bp downstream