rs245181837 SNP Detail

Summary

• ID
  rs245181837
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86412159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCAGGT AGCTGCTGTG
  AGACTGTAGC TTTGGTTTTG GATTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCCTTTTTC AGGCCCCGGT TCTTAGGTTA TTAGGCTTCT
  CTGAGAGGAC TCCTTAGCAT CCTCATTTAG CTGTCTCTCT TTATGGTTCT TCACACCGTC
  W
  TTCCCATACT ACTATTGAGA TCCCCCGCTG AGCGCGGTCA GTCTGAGCTG TAGTGCTGCA
  GGTGCCAGAG GGTCGTTCAT CCCCACAGCT TGCATGGCTG TTGTCAGCAC AGACCGGGCA
  GCAGCGACCT AGGAACCAGC GCGCCAGCCA TCCTAGTGCT TCTGGAAAGG GGTTGGAGGA
  GGTGCTGTAC TGACAGGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532333	MGP_WTSI_18_86563426	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245181837					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532333	MGP_WTSI_18_86563426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86412159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	17 bp proximal
Cpgi10353	CpG island 10353	767 bp proximal
Gm54041	predicted gene, 54041	259 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	918 bp upstream
Rr542239	regulatory region 542239	257 bp distal
Rr542240	regulatory region 542240	within coordinates
Rr542241	regulatory region 542241	428 bp proximal
Rr542242	regulatory region 542242	1008 bp proximal
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	738 bp upstream
Tssr152243	transcription start site region 152243	759 bp upstream
Tssr152244	transcription start site region 152244	776 bp upstream
Tssr152245	transcription start site region 152245	884 bp upstream
Tssr152246	transcription start site region 152246	918 bp upstream
Tssr152247	transcription start site region 152247	968 bp upstream
Tssr152248	transcription start site region 152248	1150 bp upstream
Tssr152249	transcription start site region 152249	1241 bp upstream
Tssr152250	transcription start site region 152250	1512 bp upstream