rs245192805 SNP Detail

Summary

• ID
  rs245192805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80711055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG AGCCTGCTTG GGTATCTGGA
  Y
  TGTAACGAAT ACATTAAAAA TTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320812641	CHEV_3_80607670	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245192805					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80711055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13281	CpG island 13281	580 bp distal
Gm66511	predicted gene, 66511	within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	Noncoding-Transcript-Variant
Rr578666	regulatory region 578666	423 bp distal
Rr578667	regulatory region 578667	1704 bp proximal
Rr578668	regulatory region 578668	1785 bp proximal
Tssr33765	transcription start site region 33765	1147 bp upstream
Tssr33766	transcription start site region 33766	1131 bp upstream
Tssr33767	transcription start site region 33767	1104 bp upstream
Tssr33768	transcription start site region 33768	1076 bp upstream
Tssr33769	transcription start site region 33769	1018 bp upstream
Tssr33770	transcription start site region 33770	978 bp upstream
Tssr33771	transcription start site region 33771	908 bp upstream