rs245196408 SNP Detail

Summary

• ID
  rs245196408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131650628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTTCA GTCAAGTGGC
  TCTGTCCCGG CAGGGCTAAC TACTGCCAAA GCCCTGACCC TGGGATCGGA CTGCTCCCCT
  GGAGACAGGT CGGTCTGACC TGTGTGCAAA GCCTCCCCCA GCTGGCAGAG GCACCCTCCA
  GTTCTCAGCA CTTCCTTCCC ACTGCACCCT AGCCCAGTGT GGGTAGCTCA CTGCACTCGG
  Y
  GGCGGCGGCA GCTTCCCTTC CCAGGTATTA AATTAATTTT CCCATGCTTT TGTTAGAAGA
  GAACTTTAAA AGTGGATCAA TCCTCACAGT CAGGCTTTTT TTTTTTTTTT TAAAGTTTAT
  TGAAAAATGC CATACAAGAA GCAAGACCAA ACACCTAAAC ACTACAGCCA CATCTGTCAC
  TACGAAAGGC GCAGACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329105	CHEV_4_131479232	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245196408					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131650628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	378 bp distal
Epb41	erythrocyte membrane protein band 4.1	96 bp downstream
Gm50475	predicted gene, 50475	1789 bp upstream
Rr85752	regulatory region 85752	1573 bp proximal
Rr100128	regulatory region 100128	227 bp distal
Tmem200b	transmembrane protein 200B	177 bp downstream
Tssr1320	transcription start site region 1320	1623 bp downstream
Tssr39360	transcription start site region 39360	110 bp upstream