rs245200412 SNP Detail

Summary

• ID
  rs245200412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81316975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCACACC ACAACAACCC
  AAACAAATCC ACTTTTCTTG AGCCAGGATG TCATGTAGCC CAGGCTAGCC TTCAACTTGC
  AATATAGCCA ACAATGACCT TGAATTTTTG ATTCTCTTGC CTAAGCATCC CAAGTTTGGG
  GTGTCAGGCA AGCACCAGTG TCCCTGCCCT CCAAATACAG ACTTCTGTCA AGATCCTAGA
  Y
  CACTCTTTTG CTGGCCTGGA GGACCCCCCT TCCTCACTTG GGTGCGGCCT GGGAGGCTGC
  TGTTTCTCTA GTCCCCACGA TCACTGCCAG TGAGACCCTC CACTGCCCAA ATCCACCCCA
  CAAGCAACAT CCCTAAAAAC CAAGGCTCCC AGACCCCCCC CCCCCCATCT ACCAGAAAGA
  AAATAAGTTC ACATCCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381036774	MGP_WTSI_10_80943886	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245200412					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381036774	MGP_WTSI_10_80943886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81316975 () rs orientation: forward

Symbol	Name	Function Class
Celf5	CUGBP, Elav-like family member 5	within coordinates
Cpgi1992	CpG island 1992	655 bp proximal
Rr435679	regulatory region 435679	within coordinates
Rr435680	regulatory region 435680	1533 bp proximal
Tssr98622	transcription start site region 98622	952 bp downstream
Tssr98623	transcription start site region 98623	973 bp downstream
Tssr98624	transcription start site region 98624	1192 bp downstream
Tssr98625	transcription start site region 98625	1496 bp downstream
Tssr98626	transcription start site region 98626	1507 bp downstream
Tssr98627	transcription start site region 98627	1514 bp downstream