rs245209273 SNP Detail

Summary

• ID
  rs245209273
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115507007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTAGCAT AATTCATTCT
  AGCCAAGGCA TTGCTCCAAC TTTGTTGATG ATTTGTTTTA AGGATACAGG ACACAGGGAG
  GATTTTTTTT AACTCAAATG GTCATTTCTA TTAACAAAAC AAAAATAAAC AAACAAAAGA
  GAAATGAAGT TAGAAAGAGA GGTAGAAAAA ACAATTTACC CAGACTCTGA GGAGACAAAA
  M
  CTTCCCTTGG GTCACTAAAT CCACCAAGAT GGAAATGAGA GCCACCCATT CTAGTTTTCG
  AGCCCACGCC ATTTCCACTG GCATTGCCAC GTTCAGTGTC CAGCCCTGAG ATTCCTTCAA
  GCGAAAATCG ACTGCTTGCT CACAGAAGGC ACCAACTGCC CATTCTGGGT GCAGGGCAGA
  CATGCATACC CCAACACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333852	MGP_WTSI_3_115416276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245209273					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333852	MGP_WTSI_3_115416276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115507007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	807 bp distal
Cpgi13725	CpG island 13725	1286 bp proximal
Gm9889	predicted gene 9889	1665 bp upstream
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	1798 bp upstream
Tssr35273	transcription start site region 35273	804 bp upstream
Tssr35274	transcription start site region 35274	745 bp upstream
Tssr35275	transcription start site region 35275	491 bp upstream
Tssr35276	transcription start site region 35276	359 bp downstream
Tssr35277	transcription start site region 35277	435 bp downstream
Tssr35278	transcription start site region 35278	1422 bp downstream
Tssr35279	transcription start site region 35279	1444 bp downstream
Tssr35280	transcription start site region 35280	1496 bp downstream
Tssr35281	transcription start site region 35281	1531 bp downstream
Tssr35282	transcription start site region 35282	1575 bp downstream
Tssr35283	transcription start site region 35283	1673 bp downstream