rs245225500 SNP Detail

Summary

• ID
  rs245225500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGGAT GAACGTAGAT
  GTCAGACTCT ATCATTTAAT GTGCTAGTCA TAACCTGGTT ACTAGGATAG TCCACTGTAA
  GTGTTACGAT AAATGTCATT TAAAAGATAG ATCAGCAGTA TCCTAAACAA CATCTCAACT
  TCAAGCCCAC ATGTTTATTT TTTATCTTGA ATGGAAAGTG AAACTTGTAT CATTTTTATT
  Y
  CAAAATTATG TTCATAACCA TCTTCAATGA TTCAACCAGA ATACAAAATG AATGCACTAA
  AAAGGACATT TCTATATTTC TGTAGTTAAA ATTCAGGACG GCCATTCTCG ACTGACATCT
  AGGATTGTCT GGAATACCTC TTGTAAGACT TGGAATTGGC ATTTTTTCCA CATTACAATG
  TATTAGTCAA CTTTGATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261456	CHEV_16_84714723	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245225500					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511366 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	274 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	1143 bp downstream
Rr518521	regulatory region 518521	831 bp distal
Rr518522	regulatory region 518522	132 bp distal
Rr518523	regulatory region 518523	1696 bp proximal
Tssr139173	transcription start site region 139173	272 bp downstream
Tssr139174	transcription start site region 139174	507 bp upstream
Tssr139175	transcription start site region 139175	595 bp upstream
Tssr139176	transcription start site region 139176	1131 bp upstream