rs245236562 SNP Detail

Summary

• ID
  rs245236562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCAACT TCCTCATAGA
  CAATCCAGAA TGTTTTCTCA GGGAGGAGAG CCTGAACAGC AGGGAAAGGC CTTGTGTTCC
  TGAGGTGCAA GAGTGGCCAC CTAGGACCCA AGCCCAACTT TAGAGCCATC TGCATGAAAG
  AGCCATGCAG CCCAAGGAAA CAGGGAAGGC CTCACTAATC GGAGAAGCTG AGGTAGATCA
  R
  ACATTTGGTC TCTTTAGGCT TAAAATAAGC CTGTGTTTTA TGCACAAAGA AGCACACAAT
  GAGAGATATT TAGTTTTTAT TTCATAAAAT CAAAGTATTC AATAAATAGT AGGAGGTGTG
  TCGACTCAGA GGTAATAAGA CGAATTGGGC ATAACCTGAA AGACAATGCA GTTAATTATC
  AAGAGTTCAA CACTGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662546	MGP_WTSI_19_5795630	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245236562					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662546	MGP_WTSI_19_5795630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845658 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	60 bp downstream
Mascrna	Malat1-associated small cytoplasmic RNA	294 bp downstream
Rr543159	regulatory region 543159	1985 bp distal
Rr543160	regulatory region 543160	1212 bp distal
Rr543161	regulatory region 543161	1824 bp proximal
Tssr5415	transcription start site region 5415	1204 bp downstream
Tssr5416	transcription start site region 5416	1680 bp downstream
Tssr157645	transcription start site region 157645	723 bp downstream
Tssr157646	transcription start site region 157646	753 bp downstream
Tssr157647	transcription start site region 157647	915 bp downstream
Tssr157648	transcription start site region 157648	1081 bp downstream
Tssr157649	transcription start site region 157649	1181 bp downstream
Tssr157650	transcription start site region 157650	1240 bp downstream
Tssr157651	transcription start site region 157651	1294 bp downstream
Tssr157652	transcription start site region 157652	1431 bp downstream
Tssr157653	transcription start site region 157653	1548 bp downstream
Tssr157654	transcription start site region 157654	1591 bp downstream
Tssr157655	transcription start site region 157655	1628 bp downstream
Tssr157656	transcription start site region 157656	1658 bp downstream
Tssr157657	transcription start site region 157657	1780 bp downstream
Tssr157658	transcription start site region 157658	1832 bp downstream
Tssr157659	transcription start site region 157659	1935 bp downstream