rs245248983 SNP Detail

Summary

• ID
  rs245248983
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57012244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCGAGTTC GGCGCGAGCA GAGCTGAGCC
  GTGGGGACCT AGCCTCTCCG CCCCGAGCGA GGCCGCGCCG ATGAGTCCCT AGCTGGTCCT
  TCTAAGGCTT AGGAGCCACA AACTTTTGCG GACTCCCGCG GCCCTAGCCT TTCGGCTCGC
  K
  CAGCTTTACT TGTTTAAGGT GGCGCGGTGA CTGCCCGCCA AAACCCCGCT GCCGGCCGCG
  CTTTTGTCTT GGCCATTCGG CATGGGCGCG GACCTCCTTA AAAAAAAAAA AAAAATAGCA
  CGTGGGCAGG GGCCGCGGCC CCGGCGAGGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319733554	CHEV_1_57029929	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245248983					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57012244 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	within coordinates
Cpgi268	CpG island 268	1868 bp distal
Cpgi269	CpG island 269	within coordinates
Rr411278	regulatory region 411278	1595 bp distal
Rr411279	regulatory region 411279	1238 bp distal
Rr411280	regulatory region 411280	737 bp distal
Rr411281	regulatory region 411281	93 bp distal
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	1580 bp downstream
Tssr6737	transcription start site region 6737	1041 bp downstream
Tssr6738	transcription start site region 6738	879 bp downstream
Tssr6739	transcription start site region 6739	496 bp downstream
Tssr6740	transcription start site region 6740	947 bp upstream
Tssr11747	transcription start site region 11747	1807 bp upstream
Tssr11748	transcription start site region 11748	1780 bp upstream
Tssr11749	transcription start site region 11749	1756 bp upstream
Tssr11750	transcription start site region 11750	1738 bp upstream
Tssr11751	transcription start site region 11751	1376 bp upstream
Tssr11752	transcription start site region 11752	1346 bp upstream
Tssr11753	transcription start site region 11753	1325 bp upstream
Tssr11754	transcription start site region 11754	1304 bp upstream
Tssr11755	transcription start site region 11755	873 bp upstream
Tssr11756	transcription start site region 11756	831 bp upstream
Tssr11757	transcription start site region 11757	603 bp upstream
Tssr11758	transcription start site region 11758	1415 bp downstream