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rs245250778 SNP Detail
Summary
  • ID
    rs245250778
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr5:137178896 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGTGACATC ACTAGTGGTT
GTGACATCAG CTGTTGTGGT GACATCAGCA GTGATGGTGA CATCAGCGGT GCTGGTGAAA
TCAACGGTGG TTGTGATTTC AGGTGTGGTG GTGACATCAG CAGTGATGGT GACATCACCA
GTGGTTGTGA CTTCAACAGT GGTGGTGACA TCAGCAGTGG TGGTGACATC AGCAGTGGTG
A
TTACTTCAGC AGTGGTGGTG ACATCACTAG TGGTTGTGAC TTCAGGAGTG GTGATGACAT
CAGCAGTTGT GGTGACATCA GCGGTGCTGG TGAAATCAAC AGTGGTTGTA ATTTCAGGAG
TGGTGGTGAG GTCAGCAGTG GTGGTGACCT CAGAAGTGGT GGTGACATCA GCTGTGGTGG
TGACATCAGC AGTGGTGTTG                                            

A = A

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S5/SvEvBrd
A/J
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57L/J
C58/J
CAST/EiJ
FVB/NJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
MOLF/EiJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
PWK/PhJ
RIIIS/J
SM/J
ST/bJ
ss366873423 MGP_WTSI_5_137626144 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S5/SvEvBrd
A/J
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57L/J
C58/J
CAST/EiJ
FVB/NJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
MOLF/EiJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
PWK/PhJ
RIIIS/J
SM/J
ST/bJ
rs245250778 SNP A A A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss366873423 MGP_WTSI_5_137626144 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178896 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 780 bp upstream
Tssr1678 transcription start site region 1678 436 bp downstream
Tssr1679 transcription start site region 1679 1379 bp downstream
Tssr1680 transcription start site region 1680 1399 bp upstream
Tssr1681 transcription start site region 1681 1422 bp downstream
Tssr1682 transcription start site region 1682 1439 bp downstream
Tssr1683 transcription start site region 1683 1528 bp downstream
Tssr1684 transcription start site region 1684 1544 bp downstream
Tssr1685 transcription start site region 1685 1558 bp upstream
Tssr1686 transcription start site region 1686 1585 bp downstream
Tssr1687 transcription start site region 1687 1636 bp downstream
Tssr1688 transcription start site region 1688 1660 bp downstream
Tssr1689 transcription start site region 1689 1679 bp upstream
Tssr1690 transcription start site region 1690 1846 bp upstream
Tssr1691 transcription start site region 1691 1850 bp downstream
Tssr49309 transcription start site region 49309 247 bp downstream
Tssr49310 transcription start site region 49310 90 bp upstream
Tssr49311 transcription start site region 49311 104 bp upstream
Tssr49312 transcription start site region 49312 484 bp upstream
Tssr49313 transcription start site region 49313 732 bp upstream
Tssr49314 transcription start site region 49314 1003 bp upstream
Tssr49315 transcription start site region 49315 1019 bp upstream
Tssr49316 transcription start site region 49316 1935 bp upstream
Tssr53919 transcription start site region 53919 400 bp upstream
Tssr53920 transcription start site region 53920 365 bp upstream
Tssr53921 transcription start site region 53921 207 bp upstream
Tssr53922 transcription start site region 53922 191 bp upstream
Tssr53923 transcription start site region 53923 149 bp upstream
Tssr53924 transcription start site region 53924 130 bp upstream
Tssr53925 transcription start site region 53925 98 bp upstream
Tssr53926 transcription start site region 53926 64 bp upstream
Tssr53927 transcription start site region 53927 75 bp downstream
Tssr53928 transcription start site region 53928 93 bp downstream
Tssr53929 transcription start site region 53929 130 bp downstream
Tssr53930 transcription start site region 53930 195 bp downstream
Tssr53931 transcription start site region 53931 220 bp downstream
Tssr53932 transcription start site region 53932 236 bp downstream
Tssr53933 transcription start site region 53933 274 bp downstream
Tssr53934 transcription start site region 53934 306 bp downstream
Tssr53935 transcription start site region 53935 357 bp downstream
Tssr53936 transcription start site region 53936 378 bp downstream
Tssr53937 transcription start site region 53937 468 bp downstream
Tssr53938 transcription start site region 53938 504 bp downstream
Tssr53939 transcription start site region 53939 558 bp downstream
Tssr53940 transcription start site region 53940 734 bp downstream
Tssr53941 transcription start site region 53941 774 bp downstream
Tssr53942 transcription start site region 53942 833 bp downstream
Tssr53943 transcription start site region 53943 998 bp downstream
Tssr53944 transcription start site region 53944 1047 bp downstream
Tssr53945 transcription start site region 53945 1057 bp downstream
Tssr53946 transcription start site region 53946 1078 bp downstream
Tssr53947 transcription start site region 53947 1186 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory