rs245256150 SNP Detail

Summary

• ID
  rs245256150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTATCCA TCTTCCCACC
  ATCCAGTGAG CAGTTAACAT CTGGAGGTGC CTCAGTCGTG TGCTTCTTGA ACAACTTCTA
  CCCCAAAGAC ATCAATGTCA AGTGGAAGAT TGATGGCAGT GAACGACAAA ATGGCGTCCT
  GAACAGTTGG ACTGATCAGG ACAGCAAAGA CAGCACCTAC AGCATGAGCA GCACCCTCAC
  R
  TTGACCAAGG ACGAGTATGA ACGACATAAC AGCTATACCT GTGAGGCCAC TCACAAGACA
  TCAACTTCAC CCATTGTCAA GAGCTTCAAC AGGAATGAGT GTTAGAGACA AAGGTCCTGA
  GACGCCACCA CCAGCTCCCC AGCTCCATCC TATCTTCCCT TCTAAGGTCT TGGAGGCTTC
  CCCACAAGCG ACCTACCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815805	CHEV_6_70676646	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245256150					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703636 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	within coordinates
Rr158	regulatory region 158	701 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1217 bp downstream
Rr399685	regulatory region 399685	805 bp downstream
Rr399686	regulatory region 399686	within coordinates
Tssr1880	transcription start site region 1880	198 bp upstream
Tssr56956	transcription start site region 56956	819 bp downstream
Tssr56957	transcription start site region 56957	180 bp downstream
Tssr56958	transcription start site region 56958	164 bp downstream
Tssr56959	transcription start site region 56959	146 bp downstream
Tssr56960	transcription start site region 56960	131 bp downstream
Tssr56961	transcription start site region 56961	115 bp downstream
Tssr56962	transcription start site region 56962	103 bp downstream
Tssr56963	transcription start site region 56963	56 bp downstream
Tssr56964	transcription start site region 56964	45 bp downstream
Tssr56965	transcription start site region 56965	33 bp downstream
Tssr56966	transcription start site region 56966	25 bp downstream
Tssr56967	transcription start site region 56967	5 bp downstream
Tssr56968	transcription start site region 56968	8 bp upstream
Tssr56969	transcription start site region 56969	44 bp upstream
Tssr56970	transcription start site region 56970	57 bp upstream
Tssr56971	transcription start site region 56971	77 bp upstream
Tssr56972	transcription start site region 56972	103 bp upstream
Tssr56973	transcription start site region 56973	141 bp upstream
Tssr56974	transcription start site region 56974	173 bp upstream
Tssr56975	transcription start site region 56975	206 bp upstream
Tssr61321	transcription start site region 61321	143 bp upstream
Tssr61322	transcription start site region 61322	within coordinates
Tssr61323	transcription start site region 61323	10 bp downstream
Tssr61324	transcription start site region 61324	100 bp downstream
Tssr61325	transcription start site region 61325	166 bp downstream
Tssr61326	transcription start site region 61326	201 bp downstream
Tssr61327	transcription start site region 61327	215 bp downstream
Tssr61328	transcription start site region 61328	306 bp downstream