rs245257054 SNP Detail

Summary

• ID
  rs245257054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184468500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGTGGG AGTTGTTTTG
  TTTTGTTTTG TTTTGTTTTG TTTGGAAGGA GAGAGAAACA AATATTTGTA AAGAAAACAG
  AAGTAGAAAT GCAGCATGTC CTGGTATTGA AGACTTTGAG AGACTTGCCT GCTCCTCCAC
  CAGCTAGAGT TAGATTTATG GCCCGCTGGT CCAGTTCACA ATTGTCGGTG GATGCAGGAC
  R
  TTGGGTGGGT GGGTGGGGCT TCTAAATATT ACAGTTTAGG CTCTAGAGAA CATTTACAAG
  GAAAGAGAGA GAGGCTGTGA GGGAGAGAAC TATTCTAAAC AGACTCACCT GTTTTCTGAG
  CCCTTGGGGT TGGTTACTCC TGTTGGGGGG AGGGACTTTC TATGAGGTAG ATGGAGCAAT
  AGGACTGTAG CCATTTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168856	CHEV_1_186560182	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245257054					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184468500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1557 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425268	regulatory region 425268	229 bp distal
Rr425269	regulatory region 425269	1509 bp proximal
Rr425270	regulatory region 425270	1772 bp proximal
Tssr10590	transcription start site region 10590	894 bp downstream
Tssr15648	transcription start site region 15648	1276 bp upstream