rs245259963 SNP Detail

Summary

• ID
  rs245259963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28591240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCTGG TTCCCAGGCA
  ACTGTGGCCT TCAGCCAAAC CATATCCCCA TCTATGTGTG CTCCAGTTTT TGACTTGTGC
  TCTCCAGAGG TGAAAGTGAC TTTTAGGGGC TGGACCGATG AGCTGTCTAA CAGTCAGTGA
  TTCTGGGGGC CGCAGGCAAA CTAGAGCTCA GTTTCTAGTA CCCTATACTG CAAGCCTAGC
  R
  TGCACACGCG CACACGTGCG CACACACACA CACACACACA CACACACAGA CAGAGAGAGA
  GAGAGAAGGA GGGGGACACC GTGCTGGCAC ATGAGCCCAG GCCAAGGAGC CTGAGTCTAC
  TGAGCAAGCT CCTTTGGAAA GTGTTAATGG AGGGGAGACC AAGGAGTGGC CAGCCACAAA
  TAAAACAGCA AATCTGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353481846	MGP_WTSI_2_28556748	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245259963					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481846	MGP_WTSI_2_28556748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28591240 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	852 bp distal
Gm75616	predicted gene, 75616	269 bp downstream
Rr553885	regulatory region 553885	1588 bp distal
Rr553886	regulatory region 553886	1844 bp distal
Rr553887	regulatory region 553887	1054 bp distal
Rr553888	regulatory region 553888	353 bp proximal
Spaca9	sperm acrosome associated 9	1577 bp upstream
Tssr16969	transcription start site region 16969	1410 bp downstream
Tssr16970	transcription start site region 16970	1074 bp downstream
Tssr16971	transcription start site region 16971	1041 bp downstream
Tssr16972	transcription start site region 16972	1439 bp upstream
Tssr23291	transcription start site region 23291	1569 bp upstream
Tssr23292	transcription start site region 23292	1540 bp upstream
Tssr23293	transcription start site region 23293	1489 bp upstream