rs245264644 SNP Detail

Summary

• ID
  rs245264644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGATAT TTAGTCTAAG
  GATCTATTCC TTGTGGGGTT TTTGTTTGGT TGGTTTGGTT TGCTTTGGGT TTGTGTGTGT
  GTGTGTATGT GTGTGTGTGT GTGTTTGGGA TTTTTAGTTG TTTGCTTTTG TTTTTTTGTT
  TGTTTGTTTC TTTGTTTGTT TGTTTTTTAC TACAGGCCTT GGGAAAGGTT GACAGTTTCT
  Y
  GCTAAGAGTG CATTTTTACA CTGGACTCAC ACCTACTAGT GCTGGGGTTG GGGACGACGG
  CTGAGCACTG ATTCGTGGTG GCCACTTCTC ATCTGCTTCT GGAAAAGGAC AGAGAGGTTT
  CCCTGCCTTG AAAGCTGTTT AACATTGGAG TCTACCATTG GGTTTCAATA TGAGACCAGT
  GATTGTAATT TTAGCGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269122	CHEV_2_43593956	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245264644					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628448 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	215 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	1088 bp upstream
Tssr23873	transcription start site region 23873	239 bp downstream
Tssr23874	transcription start site region 23874	580 bp downstream