rs245264939 SNP Detail

Summary

• ID
  rs245264939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92424349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTGGAG CCCCGGCGTG
  AGGCGGTGCA CGTAGGCGTA GGCGACTCGG AGGGTGGGGG TGCAGCCGGG ATAGCCCGGG
  ACGCGGGGTC CCGGAGCAGC GCCCCGCCCC CGGCCCTGGC CCCGCCCTCC TTGGCTGCTC
  TTAAGCCCGC GCCGCGGGCG CCTCCGGTTC CGTCGTCCGC TCCTTGCGCT CGGACTCCGC
  Y
  GAAGTCCGCT CAATCCTCTC CGTGCTCTTC GGTACCCACG CAGTCCTCCC AGTCCGCCCT
  CCGCTCCAGC CCCGGGCTCA CGTCTGGTCC TGCGCTCTTC GGGGTCTCAG CGTCTCGCGA
  GAAGTCCTCG CCACAGGCCT TCGGCTCCCG GGTTCAGGGG CGGATGGGGG ACCGCGGAGC
  GAGGCCGGGG CGGCTGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074159	CHEV_9_92437134	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245264939					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92424349 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Rr684632	regulatory region 684632	22 bp distal
Rr684633	regulatory region 684633	622 bp proximal
Rr684634	regulatory region 684634	749 bp proximal
Tssr86520	transcription start site region 86520	24 bp downstream
Tssr86521	transcription start site region 86521	134 bp upstream