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rs245267516 SNP Detail
Summary
  • ID
    rs245267516
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93353589 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGATCATT CCGCCGGGAG
CAAGAGCTCA GACGGGACAG AAAATTCCAT GAGGAAGAAG AGCGCCGCGA GGAACTGGAG
GAAGAGCAGC GTGGCCAAGA GCGGGACCGT TTGAGGGTGG AGGAGCAGCT TCGCGGACAG
CGAGAGGAAG AGCAGCGCCG CCGCCAGGAA TGTGACAGAA AATTACACCG GGAACTAGAG
R
TCCGCCAGGA ACTGGAGGAA GAGCGGCTGC GGGACAGAAA GCTCCGCAGG GAACAAGAGC
TCAGGCGCGA CAGAAAATTC CATGAGGAAG AAGAGCGCCG TCATGAGGAG TTCGAGGAAA
AGCAGCTGCG CCTCCAGGAA CCGGACAGAA GATTCCGCCG GGAACAAGAG CTCCGTCAGG
AATGCGTCGA GGAAGAGCGG                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876344 MGP_WTSI_3_93250204 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245267516 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876344 MGP_WTSI_3_93250204 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353589 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1488 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr962 transcription start site region 962 1156 bp downstream
Tssr963 transcription start site region 963 1120 bp downstream
Tssr964 transcription start site region 964 1021 bp downstream
Tssr30361 transcription start site region 30361 1998 bp downstream
Tssr30362 transcription start site region 30362 1982 bp downstream
Tssr30363 transcription start site region 30363 1840 bp downstream
Tssr30364 transcription start site region 30364 1768 bp downstream
Tssr30365 transcription start site region 30365 1733 bp downstream
Tssr30366 transcription start site region 30366 1680 bp downstream
Tssr30367 transcription start site region 30367 1641 bp downstream
Tssr30368 transcription start site region 30368 1617 bp downstream
Tssr30369 transcription start site region 30369 1613 bp downstream
Tssr30370 transcription start site region 30370 1604 bp downstream
Tssr30371 transcription start site region 30371 1577 bp downstream
Tssr30372 transcription start site region 30372 1567 bp downstream
Tssr30373 transcription start site region 30373 1514 bp downstream
Tssr30374 transcription start site region 30374 1500 bp downstream
Tssr30375 transcription start site region 30375 1487 bp downstream
Tssr30376 transcription start site region 30376 1451 bp downstream
Tssr30377 transcription start site region 30377 1425 bp downstream
Tssr30378 transcription start site region 30378 1403 bp downstream
Tssr30379 transcription start site region 30379 1386 bp downstream
Tssr30380 transcription start site region 30380 1307 bp downstream
Tssr30381 transcription start site region 30381 1290 bp downstream
Tssr30382 transcription start site region 30382 1235 bp downstream
Tssr30383 transcription start site region 30383 1224 bp downstream
Tssr30384 transcription start site region 30384 1215 bp downstream
Tssr30385 transcription start site region 30385 1190 bp downstream
Tssr30386 transcription start site region 30386 1168 bp downstream
Tssr30387 transcription start site region 30387 1074 bp downstream
Tssr30388 transcription start site region 30388 1055 bp downstream
Tssr30389 transcription start site region 30389 1033 bp downstream
Tssr30390 transcription start site region 30390 962 bp downstream
Tssr30391 transcription start site region 30391 952 bp downstream
Tssr30392 transcription start site region 30392 934 bp downstream
Tssr30393 transcription start site region 30393 923 bp downstream
Tssr30394 transcription start site region 30394 897 bp downstream
Tssr30395 transcription start site region 30395 870 bp downstream
Tssr30396 transcription start site region 30396 820 bp downstream
Tssr30397 transcription start site region 30397 804 bp downstream
Tssr30398 transcription start site region 30398 726 bp downstream
Tssr30399 transcription start site region 30399 647 bp downstream
Tssr30400 transcription start site region 30400 198 bp downstream
Tssr30401 transcription start site region 30401 177 bp downstream
Tssr30402 transcription start site region 30402 77 bp downstream
Tssr30403 transcription start site region 30403 40 bp downstream
Tssr30404 transcription start site region 30404 1091 bp upstream
Tssr30405 transcription start site region 30405 1202 bp upstream
Tssr30406 transcription start site region 30406 1350 bp upstream
Tssr30407 transcription start site region 30407 1545 bp upstream
Tssr34356 transcription start site region 34356 1563 bp upstream
Tssr34357 transcription start site region 34357 1498 bp upstream
Tssr34358 transcription start site region 34358 1439 bp upstream
Tssr34359 transcription start site region 34359 1364 bp upstream
Tssr34360 transcription start site region 34360 1319 bp upstream
Tssr34361 transcription start site region 34361 1262 bp upstream
Tssr34362 transcription start site region 34362 1249 bp upstream
Tssr34363 transcription start site region 34363 1224 bp upstream
Tssr34364 transcription start site region 34364 1209 bp upstream
Tssr34365 transcription start site region 34365 1183 bp upstream
Tssr34366 transcription start site region 34366 1115 bp upstream
Tssr34367 transcription start site region 34367 950 bp upstream
Tssr34368 transcription start site region 34368 920 bp upstream
Tssr34369 transcription start site region 34369 894 bp upstream
Tssr34370 transcription start site region 34370 868 bp upstream
Tssr34371 transcription start site region 34371 725 bp upstream
Tssr34372 transcription start site region 34372 64 bp upstream
Tssr34373 transcription start site region 34373 1094 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory