rs245276409 SNP Detail

Summary

• ID
  rs245276409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52217103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGAAAAT AGTTGGAATT GTAGATCTCA
  TTATGTAAAA TAAACCAGAC ACCAGTTTGT TTTTCCATAC TAAATCAACA TAGATAAGAC
  ATAATAAATA CTAgagactg gagagatggc ttgggttagt taagagcatg tcttgttctt
  R
  cataggtcac gggtttgagc cccagtacca acatggtggc tcacaactgt ctctactcca
  gtttgaggat atccaatgcc ctcttctgac ttctgtaagc atcaggcaca catgtcgtac
  acacatacat gcaacaaaac acatgcatta                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319719591	CHEV_1_52234788	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245276409					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52217103 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	1858 bp distal
Gls	glutaminase	within coordinates
Rr33831	regulatory region 33831	704 bp distal
Tssr6673	transcription start site region 6673	566 bp downstream