rs245307459 SNP Detail

Summary

• ID
  rs245307459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40903803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC ATCAAACCAT GCCCGCCGCA
  Y
  TCGGGAAGAC TCCACAGGCC GCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320728279	CHEV_3_40753290	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245307459					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40903803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	within coordinates
Gm64655	predicted gene, 64655	within coordinates
Larp1b	La ribonucleoprotein 1B	460 bp upstream
Rr397652	regulatory region 397652	144 bp upstream
Rr575871	regulatory region 575871	within coordinates
Rr575872	regulatory region 575872	147 bp proximal
Rr575873	regulatory region 575873	686 bp proximal
Rr575874	regulatory region 575874	773 bp proximal
Rr575875	regulatory region 575875	1435 bp proximal
Tssr28976	transcription start site region 28976	413 bp upstream
Tssr28977	transcription start site region 28977	450 bp upstream
Tssr28978	transcription start site region 28978	547 bp upstream
Tssr28979	transcription start site region 28979	577 bp upstream
Tssr28980	transcription start site region 28980	595 bp upstream
Tssr28981	transcription start site region 28981	1034 bp upstream
Tssr28982	transcription start site region 28982	1270 bp upstream
Tssr28983	transcription start site region 28983	1411 bp upstream