rs245310148 SNP Detail

Summary

• ID
  rs245310148
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98829489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGGCCA TTGCAGAAAT
  CACAGAGGGG TGACCTGTCA GGAGGCGGAA CTTCGTGTCA TTGGTCTACT GTAGAACAAT
  GACTTGGCCT ATGAGTCAGG TGAACTGGCA TTCAAAGACT CCCAAATGTG TAATTTCATG
  AATATATCAA AAAAAAGAGG AAATTCAATT ACCATGCTTC TGAGATAAGA AAATCTTTTT
  W
  AAAAATAAAT AAAATGACTG GTGGTGTGGG TGTGGCTTTT CCTGTCCTGA GTCCTACAAA
  CTCATTCCTC CAGCCCCCCC CCCCAAAAAA GGCAGATAAG GAAAGAGCAA CAGGAATAGT
  TTCTGATCTA CAACTGCCTA GAATGATGTC AGAACTGCTC TGAGCATCTT GGTAAATTTT
  TGTCCAATAA CTAACTTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389656808	MGP_WTSI_13_99462936	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245310148					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389656808	MGP_WTSI_13_99462936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98829489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	1717 bp proximal
Rr281821	regulatory region 281821	311 bp proximal
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	659 bp downstream
Tssr123632	transcription start site region 123632	796 bp upstream
Tssr123633	transcription start site region 123633	764 bp upstream
Tssr123634	transcription start site region 123634	256 bp upstream
Tssr123635	transcription start site region 123635	247 bp upstream
Tssr123636	transcription start site region 123636	194 bp upstream
Tssr123637	transcription start site region 123637	174 bp upstream
Tssr123638	transcription start site region 123638	138 bp downstream
Tssr123639	transcription start site region 123639	1788 bp downstream
Tssr123640	transcription start site region 123640	1825 bp downstream
Tssr123641	transcription start site region 123641	1844 bp downstream
Tssr123642	transcription start site region 123642	1912 bp downstream