rs245322758 SNP Detail

Summary

• ID
  rs245322758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107112629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAATTT TGATAGTAAA
  ACTAGAAAAT ATAAAAACAC CACAATTTTG TCAACCTTTT GCAGGGGATG TACATCTTTA
  ATGTATGCAT AACTGGAGGG GGCACTGGAA GTTTTAAAAA ATGTTTATTA CATTTATTCA
  TTTGGAGGAG CATGCTTATG AGTTGGTTTT TTTTTTTTTT AATCTGCCCC GAACAGTATG
  R
  ACCTTAATCA TGTCTTTGAG AGGTTCTGAA CTGAGCACCG TACTCTAGGT GTGAATCACA
  TTGTTAGCAC CCAGCCACTA GTTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  ATCAGCTTGC TGTATCAGCA TTATAAGTGC CTGGGCCCTT AGTACCCGTG GACCCCTTAC
  TGATGGAATG TGCTACCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362755107	MGP_WTSI_4_106928037	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245322758					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362755107	MGP_WTSI_4_106928037	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107112629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14538	CpG island 14538	1218 bp distal
Ift25	intraflagellar transport 25	within coordinates
Lrrc42	leucine rich repeat containing 42	1900 bp upstream
Rr398372	regulatory region 398372	1688 bp downstream
Rr596957	regulatory region 596957	1911 bp distal
Rr596959	regulatory region 596959	1497 bp distal
Rr596960	regulatory region 596960	1633 bp distal
Rr596961	regulatory region 596961	644 bp distal
Tssr38233	transcription start site region 38233	1530 bp downstream
Tssr38234	transcription start site region 38234	1514 bp downstream
Tssr38235	transcription start site region 38235	1493 bp downstream
Tssr38236	transcription start site region 38236	1686 bp upstream
Tssr42680	transcription start site region 42680	1941 bp upstream
Tssr42681	transcription start site region 42681	1908 bp upstream