rs245326186 SNP Detail

Summary

• ID
  rs245326186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagggagag ggagagggag agggagaggg
  agagggagag ggagagggag agggagaggg agagggagag ggagagagag agagagaggg
  agCACACTTG TTTCTGAGTG CTATGATCCT TGCATATCTA CCATCCACTA ACTGAAAATA
  Y
  TGATACTTCT TGTTTTAGAA AAGTCCAGGT ACACAGTGTT GGAGGAGCAG GGCATAGGGC
  CCTGCAAAAT CAAACCTTAA AGGCAAAATT TGTTTTTTAG CACAGATTTT CATTGTCTAT
  CATATCTCAA ATGCTTTCAT TTTCATCTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071249	CHEV_1_155034926	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245326186					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1329 bp distal
Lamc2	laminin, gamma 2	1349 bp upstream
Rr13130	regulatory region 13130	342 bp distal
Rr25076	regulatory region 25076	450 bp proximal
Rr28719	regulatory region 28719	1141 bp distal
Tssr14250	transcription start site region 14250	1740 bp upstream
Tssr14251	transcription start site region 14251	1704 bp upstream
Tssr14252	transcription start site region 14252	1674 bp upstream
Tssr14253	transcription start site region 14253	1660 bp upstream
Tssr14254	transcription start site region 14254	1641 bp upstream